Publications

Stoop J, Yokoyama Y, Adachi T. (2024) Timing of resting zone parathyroid hormone-related protein expression affects maintenance of the growth plate during secondary ossification: a computational study. Biomech Model Mechanobiol. https://doi.org/10.1007/s10237-024-01899-3
Hladyshau S, Stoop JP, Kamada K, Nie S, Tsygankov D. (2023) Spatiotemporal Coordination of Rac1 and Cdc42 at the Whole Cell Level during Cell Ruffling. Cells 12:1638. https://doi.org/10.3390/cells12121638

Martin A, Yousef A, Liu G, Ladd W, Georgiadou A, Stoop J, Randles A. (2025) Performance Portability Evaluation of Fluid-Structure Interaction Simulations on Heterogeneous Platforms. ISC High Performance 2025. https://ieeexplore.ieee.org/abstract/document/11018299

[accepted] Stoop J, Martin A, Randles A. (2025, October) Adaptive Physics Refinement enables investigation of red blood cells’ impact on adhesive tumor cell transport. Oral Presentation. Biomedical Engineering Society Annual Meeting (BMES).
[accepted] Yokoyama Y, Stoop J, Adachi T. (2025, November) Continnum-based particle modeling of primary and secondary ossification in bone morphogenesis. Oral Presentation. 13th Asian-Pacific Conference on Biomechanics.
Stoop J, Tagay Y, Prince O, Nguyen A, Ma X, Zhovmer AS, Tabdanov ED, Tsygankov D. (2024, February) A computational approach to unveil the mechanism of dynein-powered cancer cell motility. Oral Presentation. Biophysical Society Annual Meeting. doi:10.1016/j.bpj.2023.11.2025
Stoop J, Yokoyama Y, Adachi T. (2023, October) Predicting Structural Changes in Bone Morphogenesis using a Particle-based Model. Poster Presentation. ASME International Mechanical Engineering Congress & Exposition (IMECE).
Stoop J, Yokoyama Y, Adachi T. (2023, October) Continuum-Based Particle Model of Bone Morphogenesis Predicts Changes in Tissue Shape and Structure Due to Secondary Ossification. Oral Presentation. Gulf Coast Undergraduate Research Symposium.